Multi-agent systems (MAS) built on large language models (LLMs) provide a promising framework for solving complex tasks through role specialization and structured interaction. However, their performance is often limited by miscoordination and, more fundamentally, the lack of fine-grained credit assignment across agents. Existing approaches typically rely on coarse-grained feedback, making it difficult to identify which agents or interaction steps are responsible for errors. We propose Gradient-Based Connections (GBC), an approach for fine-grained attribution and optimization of multi-agent systems. GBC models a MAS as a computational graph and introduces gradient-based connection weights to quantify the influence of each agent's output on downstream agents at the token level. By constructing an attribution graph and propagating task-specific loss signals backward, our method enables precise identification of error sources and targeted prompt optimization. We further develop AgentChord, an efficient implementation that leverages prefix-based gradient computation. Experiments on MultiWOZ and τ-bench show that GBC improves multi-agent performance and outperforms strong single-agent and multi-agent baselines, and higher attribution quality is associated with greater optimization effectiveness. Code is available at: https://github.com/yxc-cyber/AgentChord.